Epistasis
SimGE (Simulator of Genotypes in Epistasis) v.1.0.1
Fast generator of interacting genotypes. SimGE (Simulator of Genotypes in Epistasis) is an easy to use and fast generator of interacting genotypes. Configuration is through a simple configuration file.
EpiSIM v.1.0
Epistasis simulation made easy. epiSIM can simulate epistasis in case-control studies, which offers several single models, as well as epistasis models to be associated with disease penetrance and allows users to extend new disease models. So,
HapEvolution v.1.0
Detects gene-gene interactions from case-control haplotype data. Complex diseases involve multiple genes with low penetration which may be distributed over the genome.
Multifactor Dimensionality Reduction v.2.0 Beta 8.4
Data mining made easy. The objective of Multifactor Dimensionality Reduction is to make available an open-source version of our Multifactor Dimensionality Reduction (MDR) software.